Troubleshooting

Problems with interfacing to R / Problems with ryp

We use the Python package ryp to interface to R. It uses the R installation pointed to by the environment variable R_HOME, or if R_HOME is not defined by running R HOME. If you encounter problems with the interface to R, it may be a solution to set the R_HOME environment variable manually.

Here, as an example, we set R_HOME to an R installation in a conda environment:

export R_HOME=conda/envs/r-renv/lib/R

In some cases, you may also need to explicitly append the R library to the environment variable LD_LIBRARY_PATH:

export LD_LIBRARY_PATH="$R_HOME/lib:$LD_LIBRARY_PATH"